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For the 2025-26 school year, there is 1 public school serving 367 students in Apalachicola, FL (there are , serving 50 private students). 88% of all K-12 students in Apalachicola, FL are educated in public schools (compared to the FL state average of 86%).

The top-ranked public school in Apalachicola, FL is Apalachicola Bay Charter School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Apalachicola, FL public school have an average math proficiency score of 64% (versus the Florida public school average of 52%), and reading proficiency score of 49% (versus the 52% statewide average). Schools in Apalachicola have an average ranking of 7/10, which is in the top 50% of Florida public schools.

Minority enrollment is 31% of the student body (majority Hispanic and Black), which is less than the Florida public school average of 66% (majority Hispanic).