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For the 2025-26 school year, there are 2 public schools serving 469 students in Wabasha, MN (there are , serving 96 private students). 83% of all K-12 students in Wabasha, MN are educated in public schools (compared to the MN state average of 90%).

The top-ranked public schools in Wabasha, MN are Wabasha-kellogg Elementary School and Wabasha-kellogg Secondary. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Wabasha, MN public schools have an average math proficiency score of 37% (versus the Minnesota public school average of 46%), and reading proficiency score of 47% (versus the 51% statewide average). Schools in Wabasha have an average ranking of 3/10, which is in the bottom 50% of Minnesota public schools.

Minority enrollment is 9% of the student body (majority Hispanic), which is less than the Minnesota public school average of 39% (majority Black and Hispanic).