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For the 2025-26 school year, there is 1 public middle school serving 274 students in Wagner, SD.

The top-ranked public middle school in Wagner, SD is Wagner Middle School - 03. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Wagner, SD public middle school have an average math proficiency score of 21% (versus the South Dakota public middle school average of 39%), and reading proficiency score of 44% (versus the 49% statewide average). Middle schools in Wagner have an average ranking of 2/10, which is in the bottom 50% of South Dakota public middle schools.

Minority enrollment is 68% of the student body (majority American Indian), which is more than the South Dakota public middle school average of 42% (majority American Indian).