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For the 2025-26 school year, there are 6 public schools serving 2,380 students in Alachua, FL (there are , serving 164 private students). 94% of all K-12 students in Alachua, FL are educated in public schools (compared to the FL state average of 86%).

The top-ranked public schools in Alachua, FL are Alachua Learning Academy Elementary School, Alachua Learning Academy Middle School and Santa Fe High School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Alachua, FL public schools have an average math proficiency score of 47% (versus the Florida public school average of 52%), and reading proficiency score of 45% (versus the 52% statewide average). Schools in Alachua have an average ranking of 4/10, which is in the bottom 50% of Florida public schools.

Minority enrollment is 48% of the student body (majority Black), which is less than the Florida public school average of 66% (majority Hispanic).