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For the 2026 school year, there are 4 public schools serving 845 students in Harbor Springs, MI (there are , serving 214 private students). 80% of all K-12 students in Harbor Springs, MI are educated in public schools (compared to the MI state average of 90%).

The top-ranked public schools in Harbor Springs, MI are Harbor Springs High School, Harbor Springs Middle School and Shay Elementary School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Harbor Springs, MI public schools have an average math proficiency score of 43% (versus the Michigan public school average of 35%), and reading proficiency score of 63% (versus the 46% statewide average). Schools in Harbor Springs have an average ranking of 9/10, which is in the top 20% of Michigan public schools.

Minority enrollment is 12% of the student body (majority American Indian), which is less than the Michigan public school average of 37% (majority Black).