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For the 2025-26 school year, there are 2 public middle schools serving 122 students in Niobrara, NE.

The top-ranked public middle schools in Niobrara, NE are Niobrara Secondary School and Isanti Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Niobrara, NE public middle schools have an average math proficiency score of 28% (versus the Nebraska public middle school average of 61%), and reading proficiency score of 25% (versus the 44% statewide average). Middle schools in Niobrara have an average ranking of 1/10, which is in the bottom 50% of Nebraska public middle schools.

Minority enrollment is 70% of the student body (majority American Indian), which is more than the Nebraska public middle school average of 34% (majority Hispanic).