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For the 2025-26 school year, there are 2 public middle schools serving 1,323 students in East Setauket, NY. The top-ranked public middle schools in East Setauket, NY are Paul J Gelinas Junior High School and Robert Cushman Murphy Junior High School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

East Setauket, NY public middle schools have an average math proficiency score of 90% (versus the New York public middle school average of 51%), and reading proficiency score of 74% (versus the 51% statewide average). Middle schools in East Setauket have an average ranking of 10/10, which is in the top 5% of New York public middle schools.

Minority enrollment is 33% of the student body (majority Asian), which is less than the New York public middle school average of 63% (majority Hispanic).