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For the 2025-26 school year, there is 1 public middle school serving 840 students in Port Jefferson Station, NY.

The top-ranked public middle school in Port Jefferson Station, NY is John F Kennedy Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Port Jefferson Station, NY public middle school have an average math proficiency score of 42% (versus the New York public middle school average of 51%), and reading proficiency score of 37% (versus the 51% statewide average). Middle schools in Port Jefferson Station have an average ranking of 3/10, which is in the bottom 50% of New York public middle schools.

Minority enrollment is 48% of the student body (majority Hispanic), which is less than the New York public middle school average of 63% (majority Hispanic).