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For the 2025-26 school year, there is 1 public middle school serving 540 students in Harrisburg, SD.

The top-ranked public middle school in Harrisburg, SD is Harrisburg South Middle School - 03. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Harrisburg, SD public middle school have an average math proficiency score of 43% (versus the South Dakota public middle school average of 39%), and reading proficiency score of 59% (versus the 49% statewide average). Middle schools in Harrisburg have an average ranking of 8/10, which is in the top 30% of South Dakota public middle schools.

Minority enrollment is 11% of the student body (majority Hispanic and Black), which is less than the South Dakota public middle school average of 42% (majority American Indian).