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For the 2025-26 school year, there are 4 public schools serving 1,310 students in Wautoma, WI (there are , serving 26 private students). 98% of all K-12 students in Wautoma, WI are educated in public schools (compared to the WI state average of 85%).

The top-ranked public schools in Wautoma, WI are Riverview Elementary School, Parkside School and Wautoma High School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Wautoma, WI public schools have an average math proficiency score of 37% (versus the Wisconsin public school average of 40%), and reading proficiency score of 36% (versus the 38% statewide average). Schools in Wautoma have an average ranking of 4/10, which is in the bottom 50% of Wisconsin public schools.

Minority enrollment is 24% of the student body (majority Hispanic), which is less than the Wisconsin public school average of 34% (majority Hispanic and Black).